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fluorescence_correlation_spectroscopy-_a_short_introduction @general
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any non-random trends present in it. In terms of fluorescence signals assuming that we get total fluorescence intensity $F_0$ at time $t_0$, the correlation fu... ein,2007 "Time Resolved methods in biophysics. 3. Fluorescence Lifetime Correlation Spectroscopy" \\ Bohmer et al., 2002, "Time-resolved fluorescence correlation spectroscopy" * **Pulsed Interleav... the living mammalian embryo with photoactivatable fluorescence correlation spectroscopy" \\ Wachsmuth et al, 2015, "High-throughput fluorescence correlation spectroscopy enables analysis of prot... al., 2006, " Dual-color total internal reflection fluorescence cross-correlation spectroscopy" * ** Stimulated
software
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oftware Package to */ /*Determine and Analyze the Fluorescence Lifetime in Time-Resolved Fluorescence Data from the Human Eye*/ * [[http://www.fluortools.com/software|Fluortools]].Fluorescence Decay and Anisotropy Analysis. * [[http://py... d in physics or biophysics for techniques such as fluorescence correlation spectroscopy (FCS) or dynamic light s... single-photon counting (TCSPC) data sets, namely fluorescence lifetime and time-resolve anisotropy decays. *
video_tutorials
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found on youtube that explain the basics of [[wp>fluorescence]], [[glossary:fluorescence lifetime]] and its applications. ==== Fluorescence and Fluorescence Microscopy ==== Fluorescence is the emission of light by a... has a longer wavelength. ([[wp>Fluorescence]]) Fluorescence and Fluorescence Microscopy explained by [[http://www.ibiology.org... oton-microscopy.html]] ==== Philippe Bastiaens: Fluorescence Lifetime Microscopy (FLIM) ==== Fluorescence-life
how_to_measure_the_instrument_response_function_irf @howto
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lution. The solution is to acquire the IRF at the fluorescence wavelength, or at least spectrally closer to the fluorescence emission wavelength. ==== General recipe ==== ... tes, but IRF must be recorded at much lower (than fluorescence) count rates anyway. Our guess is that this quen... . Using Erythrosine B, the IRF is acquired at the fluorescence wavelength. Recipe: <code> prepare 1mL of satu... let on a coverslip, measurement conditions as for fluorescence measurement </code> ==== Two photon excitatio
using_the_flcs_script_for_spectral_crosstalk_removal_via_flccs @howto
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also show a decay behaviour corresponding to its fluorescence lifetime. If the second dye is excited with a continuous wave laser, the fluorescence response in the TCSPC window will be a homogenous... sscorrelation and a correlation that involves the fluorescence lifetime information. As the fluorescence lifetime information is used to remove a false po... ers are generated: The pattern generated from the fluorescence decay is named according to the file (it correspo
diamond_nv_centers @howto
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Emission filters therefor should be 650LP. ==== Fluorescence Lifetime ==== *Fluorescence Lifetime is approx. 12ns. ===== Measuring NV centers ===== [{{ howto:jablon... he nitrogene-vacancy in a diamond lattice. Bright fluorescence corresponds to the ^3E→^3A (m_s=0) transition}}] ... 0MHz - for finding the centers, later 10MHz (12ns fluorescence lifetime)) *excitation power: >7000 a.u. @ 4
some_origins_of_multiexponetial_decays_for_single_dyes
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multiexponetial decays for pure dyes ====== The fluorescence lifetime of a dye measured with a TCSPC spectrome... product of the rotation correlation time and the fluorescence lifetime, divided by their sum). And they also kn... B) absorb may lead to biexponential decays if the fluorescence of both compounds is observed at the same wavelen... excited-state reaction relative the the original fluorescence lifetime, the observed decay time measured with a
calculate_ratiometric_single_pair_fret_distributions_using_the_pie-fret_script @howto
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* The script requires a time trace containing the fluorescence of two spectrally separated channels, one channel mainly detecting the fluorescence of the donor dye and the other channel detecting mainly the fluorescence of the acceptor dye.\\ The time traces can be acq... necessary to successfully detect single molecule fluorescence.\\ For the pulsed interleaved excitation ([[gloss... m pulse excited the Cy3 dye and consequently, the fluorescence of Cy3 and Cy5 - mainly excited via FRET - was de
fcs @glossary
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edia.org/wiki/Fluorescence_correlation_spectroscopy]])) see [[general:fluorescence_correlation_spectroscopy-_a_short_introduction|Introduction to Fluorescence Correlation Spectroscopy]].
measurement_hardware_instrumentation
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rumentation ====== ===== Spectroscopy ===== [[Fluorescence Lifetime Measurements using the FluoTime 300|Fluorescence Lifetime Measurements]] [[Fluorescence Lifetime Measurements using the FluoTime 300#Time-Resolved Fluorescence Anisotropy Measurements]] [[Fluorescence Lifetime Measurements using t... FCS)]] - Poster (pdf format) [[video_tutorials|Fluorescence and fluorescence microscopy by Nico Stuurman]] [[video_tutorials#... ith a FLIM and FCS upgrade]] [[howto:Recording a Fluorescence Lifetime Image (FLIM) Stack with a LSM Upgrade Ki
calculate_ratiometric_single_pair_fret_distributions @howto
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* The script requires a time trace containing the fluorescence of two spectrally separated channels, one channel mainly detecting the fluorescence of the donor dye and the other channel detecting mainly the fluorescence of the acceptor dye.\\ The time traces can be acq... necessary to successfully detect single molecule fluorescence.\\ \\ ===== Step-by-Step Tutorial ===== ====... m pulse excited the Cy3 dye and consequently, the fluorescence of Cy3 and Cy5 – the latter mainly excited via FR
burst_duration_and_fcs_diffusion_time @howto:burst_duration_and_fcs_diffusion_time
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n, and photobleaching in confocal single-molecule fluorescence** ===== 1. Introduction ===== In confocal single-molecule fluorescence experiments, molecular transport through the dete... nt observables: the diffusion time extracted from fluorescence correlation spectroscopy (FCS) and the burst dura... ==== 4.1 Definition ==== In FCS, the normalized fluorescence intensity autocorrelation function is defined as
microtime @products
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ion: [[http://www.picoquant.com/products/category/fluorescence-microscopes/microtime-100-upright-time-resolved-fluorescence-microscope|MicroTime 100]] ===== MicroTime 200 =... ion: [[http://www.picoquant.com/products/category/fluorescence-microscopes/microtime-200-time-resolved-confocal-fluorescence-microscope-with-unique-single-molecule-sensitivit
basics
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ls}} ====== Basics ====== * [[video_tutorials|Fluorescence and Fluorescence Microscopy by Nico Stuurman]] * [[video_tutori... ory, simulator and assessment.]] * [[general:fluorescence_correlation_spectroscopy-_a_short_introduction | Introduction to Fluorescence Correlation Spectroscopy]] * [[http://link.sp... s, Instrumentation" ]] , 2015, Springer Series on Fluorescence, Volume 15, \\ Editors: Peter Kapusta, Michael Wa
fluorescence_lifetime_measurements_using_the_fluotime_300
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300}} ~~TOC~~ ====== FluoTime 300 ====== ===== Fluorescence Lifetime Measurements ===== {{ youtube>X9ogeveN-MU?large }} Fluorescence lifetime measurements on the [[products:FluoTime3... ation wizards of the system. ===== Time-Resolved Fluorescence Anisotropy Measurements ===== {{ youtube>mo9HtWSiMb8?large }} Time-Resolved Fluorescence Anisotropy measurements on the FluoTime 300 from
using_the_anisotropy_image_script @howto
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applications
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antibunching_measurements @howto
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using_the_antibunching_script @howto
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separation_of_2_species_with @howto
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start
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pile-up_effect @glossary
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lifetime-fitting_using_the_flim_script @howto
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lifetime_component_decomposition_phasor_plot_analysis
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howto @howto
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fluorescence_lifetime @glossary
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intensity_time_trace_analysis @howto
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how_to_reinstall_symphotime
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pycorrfit @software
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roi_fitting_using_the_flim_script @howto
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update @howto
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fluofit @software
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flim @glossary
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lifetime_fitting_using_the_flim_analysis @howto
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flimfit @software
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community_news @general
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t3-mode @glossary
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convolution @glossary
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phasor_analysis @howto
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t2-mode @glossary
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mt200fcs @howto
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tcspc @glossary
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mcs @glossary
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lsm710
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symphotime64 @software
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2ffcs @howto
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pattern_matching @howto
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symphotime_tips_and_tricks @howto
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calculate_and_fit_fcs_traces_with_the_fcs_script @howto
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support_plane_analysis @glossary
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